pyfibre.addons.shg_pl_trans.tools.segmentation module

pyfibre.addons.shg_pl_trans.tools.segmentation.fibre_cell_region_swap(multi_image, fibre_mask, cell_mask)

Obtain segments from masks and swap over any incorrectly assigned segments

pyfibre.addons.shg_pl_trans.tools.segmentation.shg_pl_trans_segmentation(multi_image, fibre_networks, min_fibre_size=100, min_cell_size=200, min_fibre_frac=100, min_cell_frac=0.1, scale=1.0, **kwargs)

pyfibre.addons.shg_pl_trans.tools.segmentation.shg_segmentation(multi_image, fibre_networks, min_fibre_size=100, min_cell_size=200, min_fibre_frac=100, min_cell_frac=0.001, **kwargs)