pyfibre.model.tools.convertors module

PyFibre Image Segmentation Library

Created by: Frank Longford Created on: 26/11/2019

Last Modified: 26/11/2019

pyfibre.model.tools.convertors.binary_to_regions(binary, intensity_image=None, min_size=0, min_frac=0.0)

Convert a binary mask image to a set of scikit-image segment objects

pyfibre.model.tools.convertors.binary_to_segments(binary, segment_klass, intensity_image=None, min_size=100, min_frac=0.1)

Transform binary array into a BaseSegment instance

pyfibre.model.tools.convertors.binary_to_stack(binary)

Create a segment stack from a global binary

pyfibre.model.tools.convertors.networks_to_binary(networks, shape, area_threshold=200, iterations=9, sigma=None)

Return a global binary representing areas of an image containing networks

pyfibre.model.tools.convertors.networks_to_regions(networks, image=None, shape=None, area_threshold=200, iterations=9, sigma=None)

Transform fibre networks into a set of scikit-image segments

pyfibre.model.tools.convertors.regions_to_binary(regions, shape)

Convert a list of scikit-image segments to a single binary mask

pyfibre.model.tools.convertors.regions_to_stack(regions, shape)

Convert a list of scikit-image segments to a single binary mask

pyfibre.model.tools.convertors.segments_to_binary(segments, shape)

Transform list of BaseSegment instances into a binary array

pyfibre.model.tools.convertors.sort_by_area(segments)

Sort a list of skimage regionprops segments by thier filled_area attribute

pyfibre.model.tools.convertors.stack_to_binary(stack)

Converts a stack to a binary image

pyfibre.model.tools.convertors.stack_to_regions(stack, intensity_image=None, min_size=0, min_frac=0)

Convert a binary mask image to a set of scikit-image regionprops objects